miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|45843577|gb|CN067514.1|CN067514 CAGTTTCGGCCGGAATCCCGGGATCTTCCAGCCTGCCAGTCTGCGACGCTCAACATCCACCGAATTGCGAATTCAAACTC
CCAGAACTGAAAATGTCGGGTATCGTTCAGCAAATGTTGATGGAATTACAGAACCATCAGAGGCGAACTTATCCTGAATA
TTCGGGTCCAGTTGTTCATTCCTATCCCAACTTTAATGCTTCTGCTGATGCTGCTGCCCTCGACAAGGCCATCAAAGAAA
AAGGTGTGAATAAAGGCATCATTATAGACATTTTGACCAAAAGAAGCAATGGCCAGCGGCAGGAGATCAAAGCTGCATAC
AAGCAGGTCACAGGGAAGTCGCTGGAGGAAGATCTGAAGAAAGCCCTATCTGGAAATTGTGAAGTCATTATAGTGGGTTT
GCTAAACACTCCTGCACAGTTTGATGCTCATGAGCTGAAAAAAGCCATGAAGGGTTTAGGAACAGACGAACAAGCTTTGA
TTGACATTATTGTGCCAAAGACCAATAGAGAAATGAAACAAATTAACGCAGTTTACAAGGAAGAATATAAGACTGACCTG
TCAAAGGATATTGCATCTGAGACTTCCGGGGATTTCCGAAACATCTTACTTGCTCTTTGCAAGGGTGATCGNCATGANGA
TGTCCGTGTGAATGAAGAGCTTGCTGACAAAGATGCCAGGNCACTGTATGATGCTGGGGAAAAGATTAAGTCAGCAAATG
CATCTGTNGTCATAGACATATTTTTCATCAGAAGTTCCACGCACCTTCGGAGAGTATTTTCAGAACTATTTCCAAAATAA
GTAAACTTGATTGTGGGGAAAGGCCTGGAATCTGGGAATTCAAAGGGGGAAATTGAAAAATGGGCCGGGCCCCCATCCTT
AAAGGGGGGCTTCCCACAAAACCACCAATTTTTTTGGCAAAAGGGGCTTTTTGAAGGCCAATGGAAAGGGTTCTGGGAAA
CAATGGTGCAAAAAAGCTGTAACCAAAAATCTGGGCCCCCCCCCCGTGGGGAAATTGGCCCTGGAAAAAAAAATCCAGGG
CTCTTTTTTTAAAAAAAATTTTTTTTTGGGG




Most similar to sp|P51662|ANXA1_RABIT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P51662|ANXA1_RABIT Annexin A1 OS=Oryctolagus cuniculus GN=ANXA1
           PE=1 SV=1
          Length = 346

 Score =  228 bits (581), Expect = 6e-59
 Identities = 127/239 (53%), Positives = 161/239 (67%)
 Frame = +3

Query: 144 RTYPEYSGPVVHSYPNFNXXXXXXXXXXXIKEKGVNKGIIIDILTKRSNGQRQEIKAAYK 323
           +TY    G  V  YP FN           I  KGV++  IIDILTKR+N QRQ+IKAAY 
Sbjct: 26  KTYKGGPGSAVSPYPAFNPSSDVAALHQAIMVKGVDEATIIDILTKRNNAQRQQIKAAYL 85

Query: 324 QVTGKSLEEDLKKALSGNCEVIIVGLLNTPAQFDAHELKKAMKGLGTDEQALIDIIVPKT 503
           Q  GK L+E LKKAL+G+ E +++ LL TPAQFDA EL+ AMKGLGTDE  LI+I+  + 
Sbjct: 86  QEKGKPLDEVLKKALTGHLEEVVLALLKTPAQFDADELRAAMKGLGTDEDTLIEILASRN 145

Query: 504 NREMKQINAVYKEEYKTDLSKDIASETSGDFRNILLALCKGDRHXDVRVNEELADKDARX 683
           N+E+++IN VY+EE K DL+KDIAS+TSGDF+  LL+L KGDR  D  VNE+LAD DAR 
Sbjct: 146 NKEIREINRVYREELKRDLAKDIASDTSGDFQKALLSLAKGDRSEDFGVNEDLADTDARA 205

Query: 684 LYDAGEKIKSANASVVIDIFFIRSSTHLRRVFSELFPK*VNLIVGKGLESGNSKGEIEK 860
           LY+AGE+ K A+ +V   I   RS  HLRRVF + + K     + K L+    KG+IEK
Sbjct: 206 LYEAGERRKGADVNVFTTILTTRSYLHLRRVFQK-YSKYSQHDMNKVLDL-ELKGDIEK 262